• Jan
    15
    CBC Workshop: Virtual RAD-seq
    ALL DAY

    Day 1: Self-guided introduction to Linux and HPC (available 2 weeks ahead of workshop)

    Day 2: Introduction to HTS, RAD-seq data and QC. File format basics. de novo RADseq variant calling with Stacks.

    Day 3: Reference mapping-based variant calling with Stacks and Freebayes.

    Day 4: Filtering and reformatting variant call sets. Basic population structure analyses and QC.

  • Jan
    16
    CBC Workshop: Virtual RAD-seq
    ALL DAY

    Day 1: Self-guided introduction to Linux and HPC (available 2 weeks ahead of workshop)

    Day 2: Introduction to HTS, RAD-seq data and QC. File format basics. de novo RADseq variant calling with Stacks.

    Day 3: Reference mapping-based variant calling with Stacks and Freebayes.

    Day 4: Filtering and reformatting variant call sets. Basic population structure analyses and QC.

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